The Louisa showing in 1939 might be his second wife, because there is this possible marriage:
Marriages March quarter 1939
John Cunningham Leeds North
Louisa Lowther Leeds North
There is also the possibility that Louisa might have been married before, so the blacked out entry could be a child of a first marriage for her, or a totally unrelated person.
Mary is shown as Cunningham/Flanagan, and I have previously posted a possible marriage.
This is followed by a death
Deaths June quarter 1960
Mary C Flanagan age 25 in Leeds 2c 144
Cannot see any births for children of the marriage.
There is this possible first marriage for John:
Marriages June quarter 1933
John W Cunningham Leeds North
Clara Howden Leeds North
but cannot see a death for Clara (nor a Leeds birth for Clara Howden)
It depends how much you want to spend to try and check if these are the correct records.