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Again a big thank you for all the help - especially Jennifer c and Rosie 17   
After you made your suggestions, I traced Benjamin's family as far as I could.  I haven't found him in any censuses after his wedding in 1889 to Mary Ann Payne, but I have the complete set before that.
There is a fair chance that 'John Owen' aged 12 hours may have been named Henry Owen in the end, so this could really be them. 
And I am missing Henry/Harry in 1861, when Benjamin was living with mum Mary in Back Alley, St Saviour Southwark.
I have found a Henry Owen in Stepney Workhouse in 1861, but the name is a bit too common to be sure.  Limehouse is 3 miles from St Saviour where Benjamin and mum Mary were living, and I imagine parishes weren't that keen to take in other parishes poor. But Henry's place of birth is listed as unknown in the poor house census, so still possible.  The parents of Benjamin were Welsh - are there any chapel records for St Saviour Southwark? Baptism records especially.
Thanks again for all the help 

Hi Caroline,
Yes, that is the family I mean and Hannah Hall is the 16 year old who married Thomas Beadle 
The tree that you have seems to be one that originates from a lovely guy called Gavin Taylor from New Zealand.  He has sadly passed away now, but when I originally asked him about sources he said that someone had passed him the information & the tree had to be checked.  Gavin was a descendant of Thomas's son George Beadle, & his family tree website is here  http://homepages.ihug.co.nz/~taylgl34/gavins_ancestry.htm.
I have been using parish baptism records to verify lineages for Thomas Beadle & Hannah Hall.  Hannah has been pretty straightforward but Thomas's baptism was more elusive.
What I do have is the information from this website:
http://www.kent-opc.org/Parishes/PRTranscripts/CudhamChr1800.html
Which gives a baptism for Thomas with parents George and Elizabeth Beadle.  The transcript was pulled together by Henry Mantell and his team from the original records at Bromley.
But that's as far as I've got!
Kind Regards, Alex

And my second question about the marriage entry is:

Benjamin gives his occupation as Builder.  Is this just an impressive way of saying labourer, or does it really mean a professional Builder?
Because the Benjamin in the census entries is Errand boy then labourer and porter in an Oil warehouse as late as 1881, and this entry says Builder and widower in 1891.

I wasn't able to find a first marriage for Benjamin in the parish records, but free bmd shows Benjamin Owen marrying Sarah Roffey or Tucker in St Saviour reg district in Dec 1882. Maybe they married at the register office.
And a Sarah Owen dies aged 37 in Whitechapel in Jun 1883.

And a Mary Owens died Jun quarter 1851 in West London.

Yes Rosie17 - I found a baptism for Henry Richard Owens with Ellen as his mother and a Joseph Owens soldier as his father in 1854 in St Marylebone in Middlesex. 
A real shame, as the dates tied up!
It may be that he made up his father's name & occupation on his marriage certificate....